wepy.reporter.receptor.dashboard module¶
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class
wepy.reporter.receptor.dashboard.
ReceptorBCDashboardSection
(**kwargs)[source]¶ Bases:
wepy.reporter.dashboard.BCDashboardSection
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BC_SECTION_TEMPLATE
= '\n\nBoundary Condition: {{ name }}\n\nTotal Number of Dynamics segments: {{ total_n_walker_segments }}\n\nTotal Number of Warps: {{ total_crossings }}\n\nCumulative Boundary Crossed Weight: {{ total_unbound_weight }}\n\nRate (1/τ): {{ rate }}\n\nParameters:\n\n{{ parameters }}\n\n\n** Warping Log\n\n{{ warping_log }}\n\n'¶
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WARP_RECORD_COLNAMES
= ('cycle_idx', 'walker_idx', 'weight', 'target_idx', 'discontinuous')¶
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gen_bc_section
(**kwargs)¶
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update_values
(**kwargs)¶
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class
wepy.reporter.receptor.dashboard.
UnbindingBCDashboardSection
(bc=None, cutoff_distance=None, **kwargs)[source]¶ Bases:
wepy.reporter.receptor.dashboard.ReceptorBCDashboardSection
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RECEPTOR_PARAMETERS
= '\nCutoff Distance: {{ cutoff_distance }}\n'¶
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BC_SECTION_TEMPLATE
= '\n\nBoundary Condition: {{ name }}\n\nTotal Number of Dynamics segments: {{ total_n_walker_segments }}\n\nTotal Number of Warps: {{ total_crossings }}\n\nCumulative Boundary Crossed Weight: {{ total_unbound_weight }}\n\nRate (1/τ): {{ rate }}\n\nParameters:\n\n{{ parameters }}\n\n\n** Warping Log\n\n{{ warping_log }}\n\n'¶
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WARP_RECORD_COLNAMES
= ('cycle_idx', 'walker_idx', 'weight', 'target_idx', 'discontinuous')¶
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gen_bc_section
(**kwargs)¶
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update_values
(**kwargs)¶
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class
wepy.reporter.receptor.dashboard.
RebindingBCDashboardSection
(bc=None, cutoff_rmsd=None, **kwargs)[source]¶ Bases:
wepy.reporter.receptor.dashboard.ReceptorBCDashboardSection
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RECEPTOR_PARAMETERS
= '\nCutoff RMSD: {{ cutoff_rmsd }}\n'¶
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BC_SECTION_TEMPLATE
= '\n\nBoundary Condition: {{ name }}\n\nTotal Number of Dynamics segments: {{ total_n_walker_segments }}\n\nTotal Number of Warps: {{ total_crossings }}\n\nCumulative Boundary Crossed Weight: {{ total_unbound_weight }}\n\nRate (1/τ): {{ rate }}\n\nParameters:\n\n{{ parameters }}\n\n\n** Warping Log\n\n{{ warping_log }}\n\n'¶
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WARP_RECORD_COLNAMES
= ('cycle_idx', 'walker_idx', 'weight', 'target_idx', 'discontinuous')¶
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gen_bc_section
(**kwargs)¶
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update_values
(**kwargs)¶
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